PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01335.1.g00320.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 480aa    MW: 53481.3 Da    PI: 4.8147
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01335.1.g00320.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.62.6e-35361272102
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k+++e+         weF+
  Zmw_sc01335.1.g00320.1.am.mk  36 FLIKTYEMVEDPATNHVVSWGPGGASFVVWNPPDFSQELLPKYFKHNNFSSFIRQLNTYGFRKIDSER---------WEFA 107
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkks 102
                                   ++ F +g+++ll++i+r+k 
  Zmw_sc01335.1.g00320.1.am.mk 108 NEDFIRGHTHLLKNIHRRKP 127
                                   *****************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.13E-3631125IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3932125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.6E-6232125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-203659IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3136125IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-207486IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407599IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-208799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MLPGKERESE TEAAGMEGSQ SRSGGGGGGS SSPPPFLIKT YEMVEDPATN HVVSWGPGGA  60
SFVVWNPPDF SQELLPKYFK HNNFSSFIRQ LNTYGFRKID SERWEFANED FIRGHTHLLK  120
NIHRRKPVHS HSVQNQVNTL AESERREYED EINRLKYEKS LLLADLQKQD QQRCLTNWQM  180
QSLEDRLMQM EQRQKNIVAS LCDILQRNGA VSSPLSLQTD HFNFSKKRRV PKIGFFADDD  240
AAVEEERQAS FLQMMGAVPK SPSVFPVQQH PVNAEPFDRM ETSLVSLEKF IQRASDADAS  300
PQDMFAIADA PSLAVALGEV QSAPMETGIN LQSSTGQVHS SAGFAESSCY ASSPMLPLAD  360
LREDAPRTAK VDINSDTTST DTSQDEATTE TGGSLSQEPA KVNDVFWERF LTETPKFGRA  420
GEADSGRQED ECKSEPAEVK EDEKVAVDCG SLHRYKVVDQ ITEQMGQLAS AEYAVPHHLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D5e-252412517129Heat shock factor protein 1
5d5v_B5e-252412517129Heat shock factor protein 1
5d5u_B5e-252412517129Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961415.10.0PREDICTED: heat stress transcription factor A-4d-like
SwissprotQ93VB51e-167HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLK3Z6570.0K3Z657_SETIT; Uncharacterized protein
STRINGSi022026m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778